Index

A

accessible_mask (atomvoxelizer.ProbeAccessibleResult attribute) accessible_surface_area (atomvoxelizer.ProbeAccessibleResult attribute) accessible_volume (atomvoxelizer.ProbeAccessibleResult attribute) accessible_voxel_count (atomvoxelizer.ProbeAccessibleResult attribute) add_sphere() (atomvoxelizer.FieldVoxelGrid method) (atomvoxelizer.VoxelGrid method) (atomvoxelizer.VoxelGridCuPy method)

add_spheres() (atomvoxelizer.FieldVoxelGrid method) (atomvoxelizer.VoxelGrid method) (atomvoxelizer.VoxelGridCuPy method) analyze_mask() (atomvoxelizer.VoxelGridAnalysis method) analyze_probe_accessibility() (atomvoxelizer.VoxelGridAnalysis method) analyze_regions() (atomvoxelizer.VoxelGridAnalysis method) area_angstrom2_to_m2_per_g() (atomvoxelizer.VoxelGridAnalysis static method)

B

backend_name (atomvoxelizer.FieldVoxelGrid attribute) (atomvoxelizer.VoxelGrid attribute) (atomvoxelizer.VoxelGridCuPy property)

C

cell (atomvoxelizer.VoxelGridAnalysis property) clamp_grid() (atomvoxelizer.FieldVoxelGrid method) (atomvoxelizer.VoxelGrid method) (atomvoxelizer.VoxelGridCuPy method)

connected_components() (atomvoxelizer.VoxelGridAnalysis method)

D

div_sphere() (atomvoxelizer.FieldVoxelGrid method) (atomvoxelizer.VoxelGrid method) (atomvoxelizer.VoxelGridCuPy method)

div_spheres() (atomvoxelizer.FieldVoxelGrid method) (atomvoxelizer.VoxelGrid method) (atomvoxelizer.VoxelGridCuPy method)

F

FieldVoxelGrid (class in atomvoxelizer)

G

gpts (atomvoxelizer.VoxelGridAnalysis property)

grid (atomvoxelizer.VoxelGridAnalysis property)

I

index_to_position() (atomvoxelizer.VoxelGrid method)

M

mask() (atomvoxelizer.VoxelGridAnalysis method) mesh_at_value() (atomvoxelizer.VoxelGridAnalysis method) mesh_surface_area() (atomvoxelizer.VoxelGridAnalysis static method) min_sphere() (atomvoxelizer.FieldVoxelGrid method) (atomvoxelizer.VoxelGrid method) (atomvoxelizer.VoxelGridCuPy method) min_spheres() (atomvoxelizer.FieldVoxelGrid method) (atomvoxelizer.VoxelGrid method) (atomvoxelizer.VoxelGridCuPy method)

mul_sphere() (atomvoxelizer.FieldVoxelGrid method) (atomvoxelizer.VoxelGrid method) (atomvoxelizer.VoxelGridCuPy method) mul_spheres() (atomvoxelizer.FieldVoxelGrid method) (atomvoxelizer.VoxelGrid method) (atomvoxelizer.VoxelGridCuPy method)

N

normalize_values() (atomvoxelizer.FieldVoxelGrid method)

normalize_vectors() (atomvoxelizer.FieldVoxelGrid method)

P

plot_2D() (atomvoxelizer.FieldVoxelGrid method) (atomvoxelizer.VoxelGrid method) plot_3D() (atomvoxelizer.FieldVoxelGrid method) (atomvoxelizer.VoxelGrid method) plot_quiver_3D() (atomvoxelizer.FieldVoxelGrid method) plot_quiver_slice() (atomvoxelizer.FieldVoxelGrid method)

position_to_index() (atomvoxelizer.VoxelGrid method) positions_to_indices() (atomvoxelizer.VoxelGrid method) probe_accessible_mask() (atomvoxelizer.VoxelGridAnalysis method) probe_accessible_surface_area() (atomvoxelizer.VoxelGridAnalysis method) probe_radius (atomvoxelizer.ProbeAccessibleResult attribute) ProbeAccessibleResult (class in atomvoxelizer)

Q

quiver_3d_data() (atomvoxelizer.FieldVoxelGrid method)

quiver_slice_data() (atomvoxelizer.FieldVoxelGrid method)

R

region_volume() (atomvoxelizer.VoxelGridAnalysis method)

regions (atomvoxelizer.ProbeAccessibleResult attribute)

S

sample_voxels_in_range() (atomvoxelizer.FieldVoxelGrid method) (atomvoxelizer.VoxelGrid method) scalar_values() (atomvoxelizer.FieldVoxelGrid method) set_sphere() (atomvoxelizer.FieldVoxelGrid method) (atomvoxelizer.VoxelGrid method) (atomvoxelizer.VoxelGridCuPy method)

set_spheres() (atomvoxelizer.FieldVoxelGrid method) (atomvoxelizer.VoxelGrid method) (atomvoxelizer.VoxelGridCuPy method) surface_area() (atomvoxelizer.VoxelGridAnalysis method) surface_area_at_value() (atomvoxelizer.VoxelGridAnalysis method) surface_area_voxel_faces() (atomvoxelizer.VoxelGridAnalysis method) synchronize() (atomvoxelizer.VoxelGridCuPy method)

T

to_numpy() (atomvoxelizer.VoxelGrid method) (atomvoxelizer.VoxelGridCuPy method)

V

value_norms() (atomvoxelizer.FieldVoxelGrid method) vector_norms() (atomvoxelizer.FieldVoxelGrid method) VectorVoxelGrid (class in atomvoxelizer) volume_angstrom3_to_cm3_per_g() (atomvoxelizer.VoxelGridAnalysis static method)

voxel_volume (atomvoxelizer.VoxelGridAnalysis property) VoxelGrid (class in atomvoxelizer) VoxelGridAnalysis (class in atomvoxelizer) VoxelGridCuPy (class in atomvoxelizer) VoxelGridNumPy (in module atomvoxelizer)